包   岩 职       称：长聘教轨副教授（博士生导师，课题组长） 所属学科：植物科学系/园艺学  研究方向：细胞器稳态与植物环境可塑性 电子信箱：yanbao@sjtu.edu.cn 联系地址：  上海交通大学农业与生物学院B313

  

个人简介

2020.12- 至今     上海交通大学，农业与生物学院，长聘教轨副教授

2017.01- 2020.12，美国密歇根州立大学，助理研究员/研究助理教授

2014.08- 2016.12，美国爱荷华州立大学，博士后
       2008.09- 2014.06，中科院上海植生所，博士（硕博连读）
       2004.09- 2008.06，华中农业大学，学士

 

研究领域

1，细胞自噬在调控植物抗逆与生长中的作用机制；

2，精细调控UPR(非折叠蛋白响应)信号以平衡植物抗逆与生长；

3，叶绿体及其相关代谢途径对植物抗逆、营养与产量的影响。

 

主要成果

1，发现植物特有细胞自噬调控关键因子COST1并初步揭示其分子机制(2020，PNAS；2020，Autophagy)；
       2，证明内源本底水平UPR信号的激活对植物正常生长和发育是必需的(2019，Plant Physiology)；
       3，阐明植物内质网胁迫诱导的细胞自噬是由IRE1介导的RIDD途经来调控(2018，Autophagy)。

主持项目

发表论文(*通讯作者，#共同第一作者)

1. Wang JJ^#, Li YJ^#, Niu, Liu Y, Zhang Q, Lv YL, Li SX, Wang XH, Bao Y* (2024) Characterization of tomato autophagy-related SlCOST family genes. Plant Science DOI: 10.1016/j.plantsci.2024.112032
2. Qi H#, Wang Y#, Bao Y, Bassham DC, Chen L, Chung T, Chen QF, Hou S, Hwang I, Huang L, Lai Z, Li F, Liu Y, Wang H, Wang P, Xie Q, Zeng Y, Zhuang X, Gao C*, Jiang L*, and Shi Xiao S* (2023) Studying plant autophagy: challengesand recommended methodologies. Advanced Biotechnology DOI: 10.1007/s44307-023-00002-8
3. Zou J, Chen X, Liu C, Guo M, Kanwar MK, Qi Z, Yang P, Wang G, Bao Y, Bassham DC, Yu J, Zhou J (2023) Autophagy promotes jasmonate-mediated defense against nematodes. Nature Communications 14(1):4769.
4. Wang P*, Fan P*, Bao Y*, and Li W* (2023) Editorial: Omics Data-based Identification of Plant Specialized Metabolic Genes. Frontiers in Plant Science doi: 10.3389/fpls.2023.1209334
5. Wang J#, Zhang Q#, Bao Y* and Bassham DC* (2023) Autophagic degradation of membrane-bound organelles in plants. Bioscience Report DOI: 10.1042/BSR20221204
6. Albert E, Kim S, Magallanes-Lundback M, Bao Y, Deason N, Danilo B, Wu D, Li X, Wood JC, Bornowski N, Gore MA, Buell CR, DellaPenna D*. (2022). Genome-wide association identifies a missing hydrolase for tocopherol synthesis in plants. PNAS. 119:e2113488119.
7. Bao Y*, Gao C*, Avin-Wittenberg T*, Zhou J* and Li F* (2022) Editorial: Molecular Perspectives for Plant Autophagy Regulation. Frontiers in Plant Science DOI: 10.3389/fpls.2022.967916 
8. Liu Y, Lv Y, Wei A, Guo M, Li Y, Wang J, Wang X and Bao Y* (2022) Unfolded protein response in balancing plant growth and stress tolerance. Frontiers in Plant Science DOI: 10.3389/fpls.2022.1019414
9. Niu Y, Zhang Q, Wang J, Li Y, Wang X and Bao Y* (2022) Vitamin E synthesis and response in plants. Frontiers in Plant Science DOI: 10.3389/fpls.2022.994058
10. Klionsky DJ*, …Bao Y, … (2021) Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy (4th edition). Autophagy
11. Li SX, Cheng ZH, Dong SM, Li ZB, Zou LP, Zhao PJ, Guo X, Bao Y*, Wang WQ*, Peng M* (2021) Global identification of full-length cassava lncRNAs unveils the role of COLD-RESPONSIVE INTERGENIC lncRNA 1 in cold stress response. Plant Cell and Environment 45(2)
12. Song WM, Li YJ, Niu Y, Wu Y, Bao Y*, Yu X* (2021) Global Characterization of XRN 5’-3’ Exoribonucleases and Their Responses to Environmental Stresses in Plants. Diversity 13(12):612
13. Bao Y*,#, Song WM#, Wang PP, Yu X, Li B, Jiang CM, Shiu SH, Zhang HX*, and Bassham DC* (2020) COST1 regulates autophagy to control plant drought tolerance. PNAS. doi.org/10.1073/pnas.1918539117 
14. Bao Y*, Bassham DC (2020) COST1 balances plant growth and stress tolerance via attenuation of autophagy. Autophagy doi.org/10.1080/15548627.2020.1752981
15. Bao Y*,#, Maria Magallenes-Lundback# M, Deason D, DellaPenna D* (2020) High throughput profiling of tocochromanols in leaves and seeds of Arabidopsis and Maize. Plant Methods 16(1):126
16. Bao Y* (2020) Links between drought stress and autophagy in plants. Plant Signaling & Behavior DOI: 10.1080/15592324.2020.1779487 
17. Bao Y*, Bassham DC* (2020) ER-Phagy and Its Role in ER Homeostasis in Plants. Plants 9(12):1771
18. Bao Y*, Yu X* (2020) Phylogenetics of Molecular Regulators Contributing to Plant Stress Tolerance. Diversity 12(407)
19. Bao Y, Bassham DC, Howell SH* (2019) A functional unfolded protein response is required for normal vegetative development in Arabidopsis. Plant Physiology 179: 1834-1843
20. Wang HH, Wang XQ, Song WM, Bao Y, Jin YL, Jiang CM, Wang CT, Li B and Zhang HX* (2019) PdMYB118, isolated from a red leaf mutant of Populus deltoids, is a new transcription factor regulating anthocyanin biosynthesis in poplar. Plant Cell Report doi.org/10.1007/s00299-019-02413-1
21. Kang T, Yu CY, Liu Y, Song WM, Bao Y, Guo XT, Li B* and Zhang HX* (2019) Subtly manipulated expression of ZmmiR156 in tobacco improves drought and salt tolerance without changing the architecture of transgenic plants. Frontiers in Plant Science doi.org/10.3389/fpls.2019.01664
22. Song WM, Cheng ZH, Guo XT, Yu CY, Wang HH, Wang J, Zhang HX*, Bao Y* (2019) Overexpression of NHL6 affects seed production in transgenic Arabidopsis plants. Plant Growth Regulation. https://doi.org/10.1007/s10725-019-00486-2 
23. Bao Y, Pu YT, Yu X, Gregory BD, Srivastava R, Howell SH, Bassham DC* (2018) IRE1b degrades RNAs encoding proteins that interfere with the induction of autophagy by ER stress. Autophagy doi: 10.1080/15548627.2018.1462426
24. Bao Y*, Bassham DC* (2018) Using Arabidopsis protoplasts to study unfolded protein response signaling. Bio-protocol https://bio-protocol.org/e3101 
25. Zhu MM, Liu EQ, Bao Y, Duan SL, She J, Liu H, Wu TT, Cao XQ, Zhang J, Li B, Sheng YT, Liang MX, Zhang HX, Guo XT (2018) Low concentration of corn steep liquor promotes seed germination, plant growth, biomass production and flowering in soybean. Plant Growth Regulation. https://doi.org/10.1007/s10725-018-0449-6
26. Bao Y, Mugume Y, Bassham DC* (2017) Biochemical methods to monitor autophagic responses in plants. Methods in Enzymology 588:497-513
27. Bao Y, Howell SH* (2017) The Unfolded Protein Response Supports Plant Development and Defense as well as Responses to Abiotic Stress. Frontiers in Plant Science doi: 10.3389/fpls.2017.00344
28. Jin YL, Tang RJ, Wang HH, Jiang CM, Bao Y, Yang Y, Liang MX, Kong FJ, Li B, Zhang HX (2017). Overexpression of Populus trichocarpa CYP85A3 promotes growth and biomass production in transgenic trees. Plant Biotechnology Journal 15: 1309-1321
29. Deng Y, Srivastava R, Quilichini TD, Dong HL, Bao Y, Horner HT, Howell SH (2016) IRE1, a component of the Unfolded Protein Response signaling pathway, protects pollen development in Arabidopsis from heat stress. Plant Journal 88: 193-204
30. Bao Y, Song WM, Zhang HX* (2016) Role of Arabidopsis NHL family in ABA and stress response. Plant Signaling & Behavior doi: 10.1080/15592324.2016.1180493.
31. Bao Y#, Song WM#, Pan J, Jiang CM, Srivastava R, Li B, Zhu LY, Su HY, Gao XS, Liu H, Yu X, Yang L, Cheng XH, Zhang HX* (2016) Overexpression of the NDR1/HIN1-like gene NHL6 modifies abscisic acid sensitivity and biosynthesis in Arabidopsis. Plos One 11(2): e0148572
32. Yang Y, Tang RJ, Li B, Wang HH, Jin YL, Jiang CM, Bao Y, Su HY, Zhao N, Ma XJ, Yang L, Chen SL, Cheng XH, Zhang HX (2015) Overexpression of a Populus trichocarpa H+-pyrophosphatase gene PtVP1.1 confers salt tolerance on transgenic poplar. Tree Physiology 35: 663-677
33. Bao Y, Song WM, Jin YL, Jiang CM, Yang Y, Li B, Huang WJ, Liu H, Zhang HX* (2014) Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress. Plant Molecular Biology 86:471-483
34. Bao Y, Wang CT, Jiang CM, Pan J, Zhang GB, Liu H, Zhang HX* (2014) The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytologist 202: 174-187
35. Wang CT, Bao Y, Wang QQ, Zhang HX (2013) Introduction of the rice CYP714D1 gene into Populus inhibits expression of its homologous genes and promotes growth, biomass production and xylem fibre length in transgenic trees. Journal of Experimental Botany 64: 2847-57
36. Tang RJ, Liu H, Bao Y, Lv QD, Yang L, Zhang HX (2010) The woody plant poplar has a functionally conserved salt overly sensitive pathway in response to salinity stress. Plant Molecular Biology 74: 367-380

 

Personal web pages：

orcid.org/0000-0002-9870-5943

researchgate.net/profile/Yan-Bao-2

scholar.google.com/citations?user=FPHENbkAAAAJ&hl=en

 

发明专利

1. 包岩,牛越,张芊,李艳洁,荆宇轩(2023) 植物叶绿素水解酶、其变体、其编码基因及应用. (申请号: 2023118162230)
2. 包岩,张雯雯,牛越,李艳洁,赵云希(2023) OsCOST1 基因在植物育种调控中的应用. (申请号: 2023118162207)
3. 包岩,王娇娇,李艳洁,牛越,刘垚,张芊,吕永伦(2023) 番茄SlCOST1 基因在创制番茄新种质中的应用. (申请号: 202310404760.8)
4. 包岩,宋维萌,张洪霞(2020) Method by inhibiting the expression of COST1 gene to improve plant drought resistance. PCT Priority to CN201810901473.7A（国际专利优先权: WO 2020/029487）
5. 包岩,宋维萌,张洪霞(2018) 通过抑制COST1的表达来提高植物抗旱能力的方法. CN108949821A
6. 张洪霞,包岩,王翠婷(2013) 一种提高植物耐旱能力的方法. CN104278053A

 

实验室招聘

欢迎报考本课题组的硕、博研究生；诚邀优秀博士后加盟从事合作研究。