按PI研究组

涂晓雨 PI研究组

PI 组长:

涂晓雨  

组      员:

李传顺(生信分析科研助理)

李杨美汇(2022级博士生)

王天淼(2021级硕士生)

李亿宁(2022级硕士生)

主要项目:

1. 入选,上海海外高层次人才引进计划项目

2. 主持,国家自然科学青年基金项目(32100438)

3. 主持,中国博士后科学基金特别资助(站中)(2021T140677)

4. 主持,中国博士后科学基金面上资助(2020M672858)

 

代表性论文 (†, 共同一作; *, 通讯作者; _, Tu lab成员)

1. Tu, X., Ren, S., Shen, W., Li, J., Li, Y., Li, C., Li, Y., Zong, Z., Xie, W., Grierson, D., Fei, Z., Giovannoni, J., Li, P.*, Zhong, S.*; Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence, Nature Communications, 2022, 13:7632

2. Tu, X., Mejía-Guerra, M.K.*, Valdes Franco, J.A., Tzeng, D., Chu, P., Shen, W., Wei, Y., Dai, X., Li, P.*, Buckler, E.S., Zhong, S.*; Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, Nature Communications, 2020, 11:5089

3. Tu, X., Marand, A.P., Schmitz, R.J.*, Zhong, S.*; A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells, Plant Communications, 2022, 3:100308

4. Dong, P., Tu, X. (共同一作), Chu, P., Lü, P., Zhu, N., Grierson, D., Du, B., Li, P.*, Zhong, S.*; 3D chromatin architecture of large plant genomes determined by local A/B compartments, Molecular Plant, 2017, 10(12):1497-1509

5. Dong, P., Tu, X. (共同一作), Li, H., Zhang, J., Grierson, D., Li, P.*, Zhong, S.*; Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains, Journal of Integrative Plant Biology, 2020, 62(2):201-217

6. Dai, X., Tu, X. (共同一作), Du, B., Dong, P., Sun, S., Wang, X., Sun, J., Gang, L., Lu, T.*, Zhong, S.*, Li, P.*; Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize, Plant Journal, 2022, 109(3):675-692

7. Sun, A., Yin, C., Ma, M., Zhou, Y., Zheng, X., Tu, X., Fang, Y.; Feedback regulation of auxin signaling through the transcription of H2A.Z and deposition of H2A.Z to SMALL AUXIN UP RNAs in Arabidopsis, New Phytologist, 2022, 236(5):1721-1733

8. Wang, X., Wang, X.*, Sun, S., Tu, X., Lin, K., Qin, L., Wang, X., Li, G.*, Zhong, S.*, Li, P.*; Characterization of regulatory modules controlling leaf angle in maize, Plant Physiology, 2022, 190(1):500-515

9. Dong, P., Tu, X., Liang, Z., Kang, B., Zhong, S.*; Plant and animal chromatin three-dimensional organization: similar structures but different functions, Journal of Experimental Botany, 2020, 71(17):5119-5128

10. Dai, X., Xu, Z., Liang, Z., Tu, X., Zhong, S., Schnable, J.C.*, Li, P.*; Non‐homology‐based prediction of gene functions in maize (Zea mays ssp. mays), Plant Genome, 2020, 13(2):e20015

11. Ding, Z., Weissmann, S., Wang, M., Du, B., Huang, L., Wang, L., Tu, X., Zhong, S., Myers, C., Brutnell, T.P., Sun Q.*, Li, P.*; Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species, PLOS ONE, 2015, 10:e0140629

 

招生和招聘

硕士、博士研究生现开放申请,同时公开招聘博士后2名,竭诚欢迎各位优秀学生和青年学者加盟。

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